Utilizing an Island Model for EA to Preserve Solution Diversity for Inferring Gene Regulatory Networks

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

Utilizing an Island Model for EA to Preserve Solution Diversity for Inferring Gene Regulatory Networks

Proceedings of the IEEE Congress on Evolutionary Computation (CEC 2004)

Abstract

In this paper we address the problem of finding gene regulatory networks from artificial data sets of DNA microarray experiments. Some researchers suggested Evolutionary Algorithms for this purpose. We suggest to use an enhancement for Evolutionary Algorithms to infer the parameters of the non-linear system given by the observed data more reliably and precisely. At present, we use S-Systems because they are a general mathematical model for simulating the complex interactions of gene regulatory networks. Due to the limited number of available data, the inferring problem is highly under-determined and ambiguous. Further on, the problem often is highly multi-modal and therefore appropriate optimization strategies become necessary. We propose to use an island model to maintain diversity in the EA population to prevent premature convergence and to raise the probability of finding the global optimum.

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BibTeX

@INPROCEEDINGS{spieth04island,
    author = {Christian Spieth and Felix Streichert and Nora Speer and Andreas Zell},
    title = {Utilizing an Island Model for EA to Preserve Solution Diversity for Inferring Gene Regulatory Networks},
    booktitle = {Proceedings of the IEEE Congress on Evolutionary Computation (CEC 2004)},
    year = {2004},
    pages = {146-151},
}