All Classes
ANDFilter
APWekaHelper
APropDoubleArrResult
APropDoubleResult
APropIntResult
APropertyBFS
APropertyDistanceMatrix
AbstractDatabase
AcidicGroups
AliphaticOHGroups
Amber
Angle
AromaticBonds
AromaticOHGroups
ArrayBinning
ArrayCML
ArrayHelper
ArraySizeComparator
ArrayStatistic
Arrow
Arrows
AtomArrayInt
AtomAtomProperties
AtomDouble
AtomDoubleComparator
AtomDoubleParent
AtomDoubleResult
AtomDynamicResult
AtomExpr
AtomHCount
AtomInAcceptor
AtomInAromaticSystem
AtomInConjEnvironment
AtomInDonAcc
AtomInDonor
AtomInRing
AtomInTerminalCarbon
AtomIntInt
AtomIntResult
AtomIsNegative
AtomIsPositive
AtomIterator
AtomMass
AtomNode
AtomPair
AtomPairAtomType
AtomPairResult
AtomPairTypeComparator
AtomPairTypeHolder
AtomProperties
AtomPropertyColoring
AtomPropertyDescriptors
AtomPropertyMatrix
AtomSpec
AtomStringResult
AtomType
AtomTypePair
AtomValence
AtomVanDerWaalsVolume
AtomZPos
AtomZPosComparator
AtomsCounter
Autocorrelation
BCUT
BFS
BFSResult
BMP
BMPFile
BasicAPDistanceMetric
BasicFactoryInfo
BasicGroups
BasicTieResolver
BatchScriptReplacer
BinAtomExpr
BinBondExpr
BinaryValue
BitArrayResult
BitResult
BitSet14
BondComparator
BondDoubleResult
BondDynamicResult
BondExpr
BondInt
BondIntResult
BondIterator
BondNode
BondProperties
BondSpec
BooleanResult
BurdenEigenvalues
BurdenModifiedEigenvalues
CDKConvention
CDKTools
CDOAcceptedObjects
CDOInterface
CMLCoreModule
CMLErrorHandler
CMLHandler
CMLIDCreator
CMLMoleculeWriter
CMLMoleculeWriterBase
CMLPropertyWriter
CMLReactionModule
CMLResolver
CMLSequentialSAXReader
CMLStack
CMLSymmetryWriter
CMLWriterProperties
CentralDisplayAdapter
CentralLookup
ChemicalMarkupLanguage
ClearTextFormat
ClosureBond
Combine
Comparison
ComparisonHelper
ConformerIterator
ConjElectroTopolState
ConjugatedRing
ConjugatedRings
ConjugatedTopologicalDistance
ContiguousFragments
ConventionInterface
Convert
ConvertPanel
ConvertSkip
CreateFileName
CrystalGeometryTools
Cylinder
DFS
DFSResult
DatabaseConnection
DatabaseInterface
DecimalFormatHelper
DecimalFormatter
Deque
DequeIterator
DequeNode
DescBinning
DescDescription
DescResult
DescSelectionWriter
DescStatistic
DescVarianceNorm
Description
Descriptor
DescriptorCalculation
DescriptorException
DescriptorFactory
DescriptorFilter
DescriptorHelper
DescriptorInfo
DescriptorSelection
DescriptorStatistic
DistanceCalculation
DistanceDistanceMatrix
DistanceMatrix
DistanceMetric
DistanceMetricHelper
DistanceMetricValue
DocBookArticles
DocBookEquations
DocBookMolecules
DoubleArrayResult
DoubleInt
DoubleMatrixResult
DoubleResult
DoubleType
DragBehavior
DynamicArrayResult
ElectrogeometricalState
ElectronAffinity
ElectronegativityPauling
ElectrotopologicalState
Element
ElementCML
EuklidianComparison
Executable
External
ExternalException
ExternalFactory
ExternalHelper
ExternalInfo
FileUtilities
Filter
FilterException
FilterFactory
FilterInfo
Flat
FloatMatrixResult
FractionRotatableBonds
Fragmentation
FromToAtoms
GCPredictor
GIF
GasteigerMarsili
GasteigerState
Gaussian
GenericDataHolder
GenericDataIterator
GeoVector3D
GeomDistanceMatrix
GeometricalDiameter
GeometricalRadius
GeometricalShapeCoefficient
Geometry
GhemicalException
GhemicalInterface
GhemicalTest
GifEncoder
GlobalTopologicalChargeIndex
GraphPotentials
GraphShapeCoefficient
GrayJPEG
GroupContributionTest
GroupContributions
HBA1
HBA2
HBD1
HBD2
HIN
HardCodedKernel
HasAllDataFilter
HasDataFilter
HeavyBonds
HeteroCycles
HydrophobicGroups
IOHelper
IOType
IOTypeHolder
IcoSphere
ImageEncoder
IndexedCylinder
InfoPanel
InsertSort
InstancesHelper
Int
IntArrayResult
IntBitArrayResult
IntHashtable
IntInt
IntIntInt
IntMatrixResult
IntResult
IntrinsicState
IsomerismDetection
IteratorException
JCAMP
JCAMPData
JCAMPDataBlock
JCAMPException
JCAMPParser
JEditorPaneAndPagePrinter
JHM
JLog4JPanel
JOE
JOEAromaticTyper
JOEAtom
JOEAtomTyper
JOEBitVec
JOEBond
JOEChemTransformation
JOECommentData
JOECoordTrans
JOEDataType
JOEElement
JOEElementTable
JOEExternalBond
JOEExternalBondData
JOEFileFormat
JOEGastChrg
JOEGenericData
JOEGlobalDataBase
JOEGroupContribution
JOEHelper
JOEInternalCoord
JOEIsotopeTable
JOEKernel
JOELibTestGUI
JOEMol
JOEMol2Smi
JOEMolVector
JOEPairData
JOEPhModel
JOEProcess
JOEProcessException
JOEProperty
JOEPropertyException
JOEPropertyHelper
JOERTree
JOERandom
JOEResidue
JOEResidueData
JOERgroupData
JOERing
JOERingData
JOERingSearch
JOESSMatch
JOESmartsPattern
JOESmiNode
JOESmilesParser
JOESqrtTbl
JOETypeTable
JOEVirtualBond
JPEG
JPanel3D
Jade
Java3DHelper
Jpeg
JpegEncoder
KierShape1
KierShape2
KierShape3
LabelData
LeafAtomExpr
LeafBondExpr
Line
LineArrayHelper
LineMatrixHelper
LogP
MDLSD
MathHelper
MathUtils
Matlab
Matrix3D
Matrix3x3
MatrixCML
MatrixHelper
ModuleInterface
Mol2Image
MolDescCounter
MolFileChooser
MolFileFilter
MolGenerationHelper
MolInstance
MolInstances
MolInstancesCache
MolSparseInstance
MolViewerEvent
MolViewerEventAdapter
MolViewerEventListener
MolarRefractivity
MolconnZ
MolecularScene
MolecularWeight
MoleculeArray
MoleculeAttributeArray
MoleculeCache
MoleculeCallback
MoleculeDataCacheHolder
MoleculeFileCDO
MoleculeFileCreation
MoleculeFileDeletion
MoleculeFileType
MoleculeHuge
MoleculeIOException
MoleculeLarge
MoleculeNode
MoleculeViewer2D
MoleculesDescriptorMatrix
MonAtomExpr
MonBondExpr
Mopac
Morgan
MorganTest
MouseFastRotate
NO2Groups
NOTFilter
NativeValue
NativeValueFilter
NativeValueIterator
NbrAtomIterator
NumberFormatDescResult
NumberOfAtoms
NumberOfB
NumberOfBonds
NumberOfBr
NumberOfC
NumberOfCl
NumberOfF
NumberOfHal
NumberOfI
NumberOfN
NumberOfO
NumberOfP
NumberOfS
ORFilter
OSOGroups
OrthoLine
OrthoLines
PDB
PDF
PNG
POVRay
PPM
ParseSmart
ParseState
Pattern
Patty
PickHighlightBehavior
Point3D
PointGroup
PointGroups
PolarSurfaceArea
PpmEncoder
PrintfFormat
PrintfFormatTest
PrintfStream
PrintfWriter
ProcessFactory
ProcessInfo
ProcessPipe
ProcessPipeEntry
PropertyAcceptor
PropertyHolder
PropertyWriter
QuickInsertSort
RSCacheEntry
RadialDistributionFunction
RecurAtomExpr
RegExpFilenameFilter
RenderAtom
RenderHelper
RenderStyle
RenderTable
Renderer2D
Renderer2DChangeListener
Renderer2DModel
RenderingAtoms
ResidueIterator
ResourceLoader
ResultCMLProperties
ResultFactory
RingIterator
RingSizeComparator
RotamerIterator
RotatableBonds
RotorComparator
RotorIterator
RuleOf5Filter
SMARTSCounter
SMARTSDescriptors
SMARTSEvaluation
SMARTSFilter
SMARTSFragmentation
SMARTSPatternFVec
SMARTSPatternInt
SMARTSPatternIntInt
SMARTSPatternString
SO2Groups
SOGroups
SSKey3DS
ScalarCML
ScanfFormat
ScanfFormatTest
ScanfMatchException
ScanfReader
ScanfReaderTest
SelectionFilter
SelectionPanel
SharedAtomGroup
SharedBondGroup
SimpleBooleanDesc
SimpleDoubleAtomProperty
SimpleDoubleDesc
SimpleDynamicAtomProperty
SimpleExternalProcess
SimpleImageWriter
SimpleIntDesc
SimpleJOELibDatabase
SimpleProcess
SimpleReader
SimpleReaderWriterPipe
SimpleStringAtomProperty
SimpleWriter
SingleTieResolver
SingleTieResolverBO
SingleTieResolverDistance
SingleTieResolverENGrad
SingleTieResolverElectrons
SingleTieResolverElement
SingleTieResolverGraphPot
SingleTieResolverImpVal
SingleTieResolverImpValGrad
SingleTieResolverPartCh
Smiles
SoftCodedKernel
SoftCodedKernelBase
SortedVector
Sorter
Sphere
StackType
StatisticPanel
StatisticUtils
Statistics
StopWatch
StringArrayResult
StringInt
StringObject
StringPattern
StringResult
StringString
SybylMol2
SymAtom
SymAxesComparator
SymCoordinates
SymStatistic
Symmetry
SymmetryElement
SymmetryException
Template
TestDescriptor
TestInterface
TestLayout
TestMolecule
TestPatty
TestSMILES
TestSSSR
TestSmarts
TieResolver
Tinker
Title2Data
Title2DataTest
ToolTipInfo
TopologicalAtomPair
TopologicalDiameter
TopologicalRadius
TransformationAtom
Undefined
VectorIterator
VectorSizeComparator
Viewer
ViewerAtom
ViewerAtoms
ViewerBond
ViewerBonds
ViewerFrame
ViewerMolecule
ViewerUsage
WeightedBurdenEigenvalues
WeightedBurdenModifiedEigenvalues
XMLHandler
XMLSpecialCharacter
XYDoubleArray
XYIntArray
XYZ
XYZVector
ZIP
ZagrebIndex1
ZagrebIndex2