University of Tuebingen Lehrstuhl Rechnerarchitektur, Prof Dr. Zell
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Users

Here is a list of companies using the JavaEvA library. We would be proud to add you to this list, if you will send us an E-Mail.

Name Description
Altana Pharma Using JavaEvA for combinartorial libary design optimization.
INSILICO biotechnology Optimizing kinetic model parameters to fit timeseries of the glucose metabolism of yeast.
BMW During the BMBF-Project Optimization of combustion engines .
hte GmbH During the BMBF-Project Automated Crystallization.

Software using JavaEvA

Here is a list of software packages using the JavaEvA library.

Name Description
Bioinformatics:  
JCell JCell is a framework to simulate intra-cellular processes based on gene regulatory mechanisms. The project is aiming to model and reconstruct genetic interactions in silico, and helps researchers to gain new insights in the organisational structure of an organism.
Chemoinformatics:  
joelib JOELib is a platform independent open source computational chemistry package written in Java.

Publications using JavaEvA

Benchmarking Evolutionary Algorithms on Convenience Kinetics Models of the Valine and Leucine Biosynthesis in C. glutamicum
A. Dräger, M. Kronfeld, J. Supper, H. Planatscher, J. Magnus, M. Oldiges and A. Zell
IEEE Congress on Evolutionary Computation, Singapore
September 25-28, 2007

Automatic Calibration of Camera to World Mapping in RoboCup using Evolutionary Algorithms
P. Heinemann, F. Sehnke, F. Streichert, and A. Zell
Proceedings of the IEEE International Congress on Evolutionary Computing (CEC 2006),
pp. 4459-4466, 2006

Parallelization of Multi-Objective Evolutionary Algorithms using Clustering Algorithms
F. Streichert, H. Ulmer, and A. Zell
Conference on Evolutionary Multi-Criterion Optimization - EMO 2005,
Guanajuato, México, March 9-11, 2005

Multi-Objective Model Optimization for Inferring Gene Regulatory Networks
C. Spieth, F. Streichert, N. Speer, and A. Zell
Conference on Evolutionary Multi-Criterion Optimization - EMO 2005,
Guanajuato, México, March 9-11, 2005

Comparing Discrete and Continuous Genotypes on the Constrained Portfolio Selection Problem
F. Streichert, H. Ulmer, and A. Zell
Genetic and Evolutionary Computation Conference - GECCO 2004,
Seattle, WA, USA, June 26-30, 2004, Proceedings, Part II. pp. 1239-1250, © Springer-Verlag (LNCS 3103), ISBN 3-540-22343-6
Abstract: [pdf]

Optimizing Topology and Parameters of Gene Regulatory Network Models from Time-Series Experiments
C. Spieth, F. Streichert, N. Speer, and A. Zell
Genetic and Evolutionary Computation Conference - GECCO 2004,
Seattle, WA, USA, June 26-30, 2004, Proceedings, Part I. pp. 461-470, © Springer-Verlag (LNCS 3102), ISBN 3-540-22344-4
Abstract: [pdf]

Comparing Genetic Programming and Evolution Strategies on Inferring Gene Regulatory Networks
F. Streichert, H. Planatscher, C. Spieth, H. Ulmer, and A. Zell
Genetic and Evolutionary Computation Conference - GECCO 2004,
Seattle, WA, USA, June 26-30, 2004, Proceedings, Part I. pp. 471-480, © Springer-Verlag (LNCS 3102), ISBN 3-540-22344-4
Abstract: [pdf]

How to evolve the Head-Tail Pattern from Reaction-Diffusion Systems
F. Streichert, C. Spieth, H. Ulmer, and A. Zell
Proceedings of the 2004 NASA/DoD Conference on Evolvable Hardware
Seattle, WA, USA, June 24-26, 2004, Proceedings pp. 261-268, IEEE Press, ISBN 0-7695-2145-2
Abstract: [pdf]

Evaluating a Hybrid Encoding and Three Crossover Operators on the Constrained Portfolio Selection Problem
F. Streichert, H. Ulmer, and A. Zell
Congress on Evolutionary Computation (CEC 2004)
Portland, OR, USA, June 19-23, 2004, Proceedings Part I pp. 932-939, IEEE Press, ISBN 0-7803-8515-2
Abstract: [pdf]

A Memetic Inference Method for Gene Regulatory Networks Based on S-Systems
C. Spieth, F. Streichert, N. Speer, and A. Zell
Congress on Evolutionary Computation (CEC 2004)
Portland, OR, USA, June 19-23, 2004, Proceedings Part I pp. 152-157, IEEE Press, ISBN 0-7803-8515-2
Abstract: [pdf]

Utilizing an Island Model for EA to Preserve Solution Diversity for Inferring Gene Regulatory Networks
C. Spieth, F. Streichert, N. Speer, and A. Zell
Congress on Evolutionary Computation (CEC 2004)
Portland, OR, USA, June 19-23, 2004, Proceedings Part I pp. 146-151, IEEE Press, ISBN 0-7803-8515-2
Abstract: [pdf]

Evolution Strategies with Controlled Model Assistance
H. Ulmer, F. Streichert, and A. Zell
Congress on Evolutionary Computation (CEC 2004)
Portland, OR, USA, June 19-23, 2004, Proceedings Part II pp. 1569-1576, IEEE Press, ISBN 0-7803-8515-2
Abstract: [pdf]

Iteratively Inferring Gene Regulatory Networks with Virtual Knockout Experiments
C. Spieth, F. Streichert, N. Speer and A. Zell
Proceedings of the 2nd European Workshop on Evolutionary Bioinformatics (evoBIO)
Applications of Evolutionary Computing: EvoWorkshops2004, LNCS, vol. 3005, pp. 102-111
Abstract: [pdf]

Evolution Strategies assisted by Gaussian Processes with improved Pre-Selection Criterion
H. Ulmer, F. Streichert, and A. Zell
Congress on Evolutionary Computation, CEC 2003,
Canberra, Australia, December 8-12, 2003, Proceedings, Part I. pp. 692-699, IEEE-Press, ISBN 0-7803-7804-0
Abstract: [pdf]

A Clustering Based Niching EA for Multimodal Search Spaces
F. Streichert, G. Stein, H. Ulmer, and A. Zell
Evolution Artificielle 6th International Conference (EA 2003)
Marseille, France, October 27-30, 2003, Proceedings pp. 169-180, ISBN 2-72261-12667-8
Evolution Artificielle, pp. 293-304, © Springer-Verlag (LNCS 2936), ISBN 3-540-21523-9
Abstract: [pdf]

Evolutionary Algorithms and the Cardinality Constrained Portfolio Selection Problem
F. Streichert, H. Ulmer, and A. Zell
Selected Papers of the International Conference on Operations Research (OR 2003)
Heidelberg, Germany, September 3-5, 2003, pp. 253-260, Springer, ISBN 3-540-21445-3
Abstract: [pdf]

Optimization by Gaussian Processes Assisted Evolution Strategies
H. Ulmer, F. Streichert, and A. Zell
Selected Papers of the International Conference on Operations Research (OR 2003)
Heidelberg, September 3-5, 2003, pp. 435-442, Springer, ISBN 3-540-21445-3
Abstract: [pdf]

Evolving the Ability of Limited Growth and Self-Repair for Artificial Embryos
F. Streichert, C. Spieth, H. Ulmer, and A. Zell
Advances in Artificial Life - Proceedings of the 7th European Conference on Artificial Life (ECAL)
Dortmund, Germany, September 14-17, 2003, Proceedings pp. 289-298, © Springer-Verlag (LNAI 2801), ISBN 3-540-20057-6
Abstract: [pdf]

Model-Assisted Steady-State Evolution Strategies
H. Ulmer, F. Streichert, and A. Zell
Genetic and Evolutionary Computation Conference - GECCO 2003,
Chicago, IL, USA, July 12-16, 2003. Proceedings, Part I. pp. 610-621, © Springer-Verlag (LNCS 2723), ISBN 3-540-40602-6
Abstract: [pdf]

Book Chapters

Model Assisted Evolution Strategies
H. Ulmer, F. Streichert, and A. Zell
in "Knowledge Incorporation in Evolutionary Computation", in Studies in Fuzziness and Soft Computing Series, Springer, to appear 2004.

Posters

A Clustering Based Niching Method for Evolutionary Algorithms
F. Streichert, G. Stein, H. Ulmer, and A. Zell
Genetic and Evolutionary Computation Conference - GECCO 2003,
Chicago, IL, USA, July 12-16, 2003. Proceedings, Part I. pp. 644-645, © Springer-Verlag (LNCS 2723), ISBN 3-540-40602-6
Abstract: [pdf]

 

Last changes: 20.02.2008, 11:06 CET planatsc.
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