Publications

JCell - a Java based framework for inferring regulatory networks from time series data

C. Spieth, J. Supper, F. Streichert, N. Speer, and A. Zell

Bioinformatics, 22, pp. 2051-2052

Abstract

Comparing Mathematical Models on the Problem of Network Inference

C. Spieth, N. Hassis, F. Streichert, J. Supper, N. Speer, K. Beyreuther, and A. Zell

Genetic and Evolutionary Computation Conference (GECCO 2006), Seattle, USA, to be published

nominated for GECCO Best Paper Award 2006

Comparing Evolutionary Algorithms on the Problem of Network Inference

C. Spieth, R. Worzischek, F. Streichert, J. Supper, N. Speer, and A. Zell

Genetic and Evolutionary Computation Conference (GECCO 2006), Seattle, USA, to be published

Predicting Single Genes Related to Immune-Relevant Processes

C. Spieth, F. Streichert, N. Speer, C. Sinzger, K. Eberhard, and A. Zell

IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) 2005, San Diego, USA

Proceedings, pp. 461-468, IEEE press

Abstract, [pdf]

Feedback Memetic Algorithms for Modeling Gene Regulatory Networks

C. Spieth, F. Streichert, J. Supper, N. Speer, and A. Zell

IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) 2005, San Diego, USA

Proceedings, pp. 61-67, IEEE press

Abstract, [pdf]

Reverse Engineering Non-Linear Gene Regulatory Networks Based on the Bacteriophage λ cI Circuit

J. Supper, C. Spieth, and A. Zell

IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) 2005, San Diego, USA

Proceedings, pp. 325-332, IEEE press

Inferring Regulatory Systems with Noisy Pathway Information

C. Spieth, F. Streichert, N. Speer, and A. Zell

German Conference on Bioinformatics (GCB 2005), Hamburg, Germany

LNI, vol. P-71, pp. 193-203, GI

Abstract, [pdf]

Clustering Based Approach to Identify Solutions for the Inference of Regulatory Networks

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

IEEE Congress on Evolutionary Computation (CEC 2005), Edinburgh, UK

Proceedings, vol. 1, pp. 660-667, IEEE Press

Abstract, [pdf]

Multi-Objective Model Optimization for Inferring Gene Regulatory Networks

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

Conference on Evolutionary Multi-Criterion Optimization (EMO 2005), Guanajuato, Mexico

LNCS 3410, pp. 607–620, 2005, Springer-Verlag

Abstract, [pdf]

Optimizing Topology and Parameters of Gene Regulatory Network Models from Time-Series Experiments

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

Genetic and Evolutionary Computation Conference (GECCO 2004), Seattle, USA,

LNCS 3102 (Part I), pp. 461-470, Springer-Verlag

Abstract, [pdf]

A Memetic Inference Method for Gene Regulatory Networks Based on S-Systems

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

IEEE Congress on Evolutionary Computation (CEC 2004), Portland, USA

Proceedings, vol. 1, pp. 152-157, IEEE Press

Abstract, [pdf]

Utilizing an Island Model for EA to Preserve Solution Diversity for Inferring Gene Regulatory Networks

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

IEEE Congress on Evolutionary Computation (CEC 2004), Portland, USA

Proceedings, vol. 1, pp. 146-151, IEEE Press

Abstract, [pdf]

Comparing Genetic Programming and Evolution Strategies on Inferring Gene Regulatory Networks

F. Streichert, H. Planatscher, C. Spieth, H. Ulmer, and A. Zell

Genetic and Evolutionary Computation Conference (GECCO 2004), Seattle, USA,

LNCS 3102 (Part I), pp. 471-480, Springer-Verlag

How to evolve the Head-Tail Pattern from Reaction-Diffusion Systems

F. Streichert, C. Spieth, H. Ulmer, and A. Zell

NASA/DoD Conference on Evolvable Hardware (EH 2004), Seattle, USA,

Proceedings pp. 261-268, IEEE Press

Iteratively Inferring Gene Regulatory Networks with Virtual Knockout Experiments

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

2nd European Workshop on Evolutionary Bioinformatics (evoBIO 2004), Coimbra, Portugal

LNCS 3005, pp. 102-111, Springer-Verlag

Abstract, [pdf]

Evolving the Ability of Limited Growth and Self-Repair for Artificial Embryos

F. Streichert, C. Spieth, H. Ulmer, and Andreas Zell

7th European Conference on Artificial Life (ECAL 03), Dortmund, Germany,

LNAI 2801, pp. 289-298, Springer-Verlag

Posters

Identifying Valid Solutions for the Inference of Regulatory Networks

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

Genetic and Evolutionary Computation Conference (GECCO 2005), Washington DC, USA

Proceedings, pp. 469-471, ACM Press

Abstract, [pdf]

JCell - Inferring Genetic Networks

Christian Spieth, Felix Streichert, Nora Speer, and Andreas Zell

FEBS Workshop on Systems Biology, SysBio 2005, Gosau, Austria

JCell - Inferring Genetic Interactions from DNA Microarray Data

Christian Spieth, Andreas Zell

NGFN Symposium, 20. - 21. November 2004, Berlin

Misc

JCell : a Java framework for inferring genetic networks

Christian Spieth

Technical Report, Universitätsbibliothek Tübingen, 5/2005

URN: urn:nbn:de:bsz:21-opus-17001

URL:http://w210.ub.uni-tuebingen.de/dbt/volltexte/2005/1700/

"Systembiologie - Vom Experiment zur Struktur" (German only)

Christian Spieth

BIOspektrum - Special Edition - 10 Years BIOspektrum, 1/2005, pp. 100-102

"Netzwerke unter der Lupe" (German only)

Christian Spieth, Nora Speer, and Andreas Zell

GenomXpress - Informationen der deutschen Genomforschung, pp. 4-6, September 2004

[pdf]

Supplements

A Pseudo-Linear Model Approach to Infer Gene Regulatory Networks

WABI 2005

C. Spieth, J. Supper, F. Streichert, N. Speer, and A. Zell

[pdf]