Publications

Publication of EDISA

Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell:
EDISA: extracting biclusters from multiple time-series of gene expression profiles
BMC Bioinformatics 2007, 8:334 [open access]

Publications describing the biological datasets included into EDISA

Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K:
The AtGenExpress global stress expression data set: Protocols, evaluation and exemplary data analysis of UV-B light, drought and cold stress responses.
Plant J. 2007, 50, 347-363

Weinstock-Guttman B, Badgett D, Patrick K, Hartrich L, Santos R, Hall D, Baier M, Feichter J, Ramanathan M:
Genomic effects of IFN-beta in multiple sclerosis patients.
J Immunol 2003, 171(5):2694-2702

Spellman P T, Sherlock G, Zhang M Q, Iyer V R, Anders K, Eisen M B, Brown P O, Botstein D, Futcher B
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
Mol Biol Cell, 1998, 9, 3273-3297

Gasch A P, Spellman P T, Kao C M, Carmel-Harel O, Eisen M B, Storz G, Botstein D, Brown P O
Genomic expression programs in the response of yeast cells to environmental changes.
Mol Biol Cell, 2000, 11, 4241-4257

Traxler M F, Chang D, Conway T
Guanosine 3',5'-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli.
Proc Natl Acad Sci U S A, 2006, 103, 2374-2379