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Year : 2011

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[1] Daniel Dube and Andreas Zell. Real-time plane extraction from depth images with the randomized hough transform. In IEEE ICCV Workshop on Challenges and Opportunities in Robot Perception, pages 1084 -1091, Barcelona, Spain, November 2011. [ DOI ]
[2] Adrian Schröder. Inference of gene-regulatory networks in primary human hepatocytes. PhD thesis, University of Tuebingen, Tübingen, Germany, November 2011. [ details | link ]
[3] Philipp Vorst, Artur Koch, and Andreas Zell. Efficient self-adjusting, similarity-based location fingerprinting with passive UHF RFID. In IEEE International Conference on RFID-Technology and Applications (RFID-TA2011), pages 160-167, Sitges, Barcelona, Spain, September 15-16 2011. IEEE. [ DOI | details | pdf ]
[4] Ran Liu, Philipp Vorst, Artur Koch, and Andreas Zell. Path following for indoor robots with RFID received signal strength. In The 19th International Conference on Software, Telecommunications and Computer Networks (SoftCOM 2011), Split, Hvar, and Dubrovnik, Croatia, September 2011. (Best paper award at the Symposium on RFID Technologies and Internet of Things). [ details | pdf ]
[5] Sebastian A. Scherer, Daniel Dube, Philippe Komma, Andreas Masselli, and Andreas Zell. Robust Real-Time Number Sign Detection on a Mobile Outdoor Robot. In Proceedings of the 6th European Conference on Mobile Robots (ECMR 2011), Örebro, Sweden, September 2011. [ details | pdf ]
[6] Adrian Schröder, Kathrin Klein, Stefan Winter, Matthias Schwab, Michael Bonin, Andreas Zell, and Ulrich M. Zanger. Genomics of ADME gene expression: mapping expression quantitative trait loci relevant for absorption, distribution, metabolism and excretion of drugs in human liver. The Pharmacogenomics Journal, pages 1473-1150, September 2011. [ DOI | details | link | pdf ]
[7] Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Adrian Schröder, and Andreas Zell. ProDGe: investigating protein-protein interactions at the domain level. Technical report, Nature Precedings, August 2011. [ DOI | details | link | pdf ]
[8] Philipp Vorst. Mapping, Localization, and Trajectory Estimation with Mobile Robots Using Long-Range Passive RFID. PhD thesis, University of Tuebingen, Tübingen, Germany, August 2011. [ details | link | pdf ]
[9] Marius Hofmeister. Self-Localization, Mapping and Coverage with Resource-Limited Mobile Robots. PhD thesis, University of Tuebingen, Tübingen, Germany, July 2011.
[10] Adrian Schröder, Johannes Wollnik, Clemens Wrzodek, Andreas Dräger, Michael Bonin, Oliver Burk, Maria Thomas, Wolfgang E. Thasler, Ulrich M. Zanger, and Andreas Zell. Inferring statin-induced gene regulatory relationships in primary human hepatocytes. Bioinformatics, 27(18):2473-2477, July 2011. [ DOI | details | link | pdf ]
[11] Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, and Michael Hucka. JSBML: a flexible Java library for working with SBML. Bioinformatics, 27(15):2167-2168, June 2011. [ DOI | details | link | pdf ]
[12] Adrian Schröder, Clemens Wrzodek, Johannes Wollnik, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen, and Andreas Zell. Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization. In IEEE Congress on Evolutionary Computation (CEC 2011), New Orleans, USA, June 2011. IEEE. [ DOI | details | link | pdf ]
[13] Clemens Wrzodek, Andreas Dräger, and Andreas Zell. KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats. Bioinformatics, 27(16):2314-2315, June 2011. [ DOI | details | link | pdf ]
[14] Marius Hofmeister, Marcel Kronfeld, and Andreas Zell. Cooperative visual mapping in a heterogeneous team of mobile robots. In IEEE International Conference on Robotics and Automation (ICRA), pages 1491-1496, Shanghai, China, May 2011. [ pdf ]
[15] Carsten Henneges. Feature Selection and Data Mining for Proteomics and Metabolomics. PhD thesis, University of Tuebingen, Tübingen, Germany, March 2011. [ details | link ]
[16] Johannes Eichner, Georg Zeller, Sascha Laubinger, and Gunnar Raetsch. Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics, 12(1):55, February 2011. [ DOI | link ]
[17] Sibylle Hoeppe, Thomas D. Schreiber, Hannes Planatscher, Andreas Zell, Markus F. Templin, Dieter Stoll, Thomas O. Joos, and Oliver Poetz. Targeting peptide termini, a novel immunoaffinity approach to reduce complexity in mass spectrometric protein identification. Mol Cell Proteomics, 10(2):M110.002857, February 2011. [ DOI | details | link | pdf ]
[18] Andreas Dräger. Computational Modeling of Biochemical Networks. PhD thesis, University of Tuebingen, Tübingen, Germany, January 2011. [ details | link ]
[19] Holger Franken, Rainer Lehmann, Hans-Ulrich Häring, Andreas Fritsche, Norbert Stefan, and Andreas Zell. Wrapper- and ensemble-based feature subset selection methods for biomarker discovery in targeted metabolomics. In Marco Loog, Lodewyk Wessels, Marcel Reinders, and Dick de Ridder, editors, Pattern Recognition in Bioinformatics, volume 7036 of Lecture Notes in Computer Science, pages 121-132. Springer Berlin / Heidelberg, 2011. 10.1007/978-3-642-24855-9_11. [ link ]
[20] Georg Hinselmann, Andreas Jahn, Nikolas Fechner, Lars Rosenbaum, and Andreas Zell. Approximation of graph kernel similarities for chemical graphs by kernel principal component analysis. In Clara Pizzuti, Marylyn D. Ritchie, and Mario Giacobini, editors, Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, volume 6623 of Lecture Notes in Computer Science, pages 123-134. Springer Berlin Heidelberg, 2011.
[21] Georg Hinselmann, Andreas Jahn, Lars Rosenbaum, and Andreas Zell. Fast data mining with sparse chemical graph fingerprints by estimating the probability of unique patterns. In Michel Verleysen, editor, Proceedings of 19th European Symposium on Artificial Neural Networks (ESANN 2011), pages 417-422, Bruges, Belgium, 2011.
[22] Georg Hinselmann, Lars Rosenbaum, Andreas Jahn, Nikolas Fechner, Claude Ostermann, and Andreas Zell. Large-scale learning of structure-activity relationships using a linear support vector machine and problem-specific metrics. Journal of Chemical Information and Modeling, 52:203-213, 2011.
[23] Georg Hinselmann, Lars Rosenbaum, Andreas Jahn, Nikolas Fechner, and Andreas Zell. jcompoundmapper: An open source java library and command-line tool for chemical fingerprints. Journal of Cheminformatics, 3(3), 2011.
[24] Andreas Jahn, Georg Hinselmann, Lars Rosenbaum, Nikolas Fechner, and Andreas Zell. Boltzmann-enhanced flexible atom-pair kernel with dynamic dimension reduction. Molecular Informatics, 30(4):307-315, 2011.
[25] Andreas Jahn, Lars Rosenbaum, Georg Hinselmann, and Andreas Zell. 4D Flexible Atom-Pairs: An efficient probabilistic conformational space comparison for ligand-based virtual screening. Journal of Cheminformatics, 3(23), 2011.
[26] Yasir Niaz Khan, Philippe Komma, Karsten Bohlmann, and Andreas Zell. Grid-based visual terrain classification for outdoor robots using local features. In IEEE Symposium on Computational Intelligence in Vehicles and Transportation Systems (CIVTS 2011), pages 16 - 22, Paris, France, apr 2011. [ DOI | pdf ]
[27] Yasir Niaz Khan, Philippe Komma, and Andreas Zell. High resolution visual terrain classification for outdoor robots. In Computer Vision Workshops (ICCV Workshops), 2011 IEEE International Conference on, pages 1014 -1021, Barcelona, Spain, nov 2011. [ DOI | pdf ]
[28] Andreas Masselli, Karl Engelbert Wenzel, and Andreas Zell. Verfahren zur Bestimmung der relativen Lage eines Objektes im Raum sowie optisches Eingabesystem, 2011. Patent, DE 10 2011 075 253.6, Submitted 2011.05.04.
[29] Lars Rosenbaum, Georg Hinselmann, Andreas Jahn, and Andreas Zell. Interpreting linear support vector machine models with heat map atom and bond coloring. Journal of Cheminformatics, 3:11, 2011.
[30] Verena Schattel, Georg Hinselmann, Andreas Jahn, Andreas Zell, and Stefan Laufer. A modeling and benchmark data set for the inhibition of c-jun n-terminal kinase-3. Journal of Chemical Information and Modeling, 51:670-679, 2011.

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