All Classes

AcidicGroups AliphaticOHGroups ANDFilter Angle APropDoubleArrResult APropDoubleResult APropIntResult AromaticBonds AromaticOHGroups ArrayBinning ArrayHelper ArrayStatistic AtomArrayInt AtomAtomProperties AtomDouble AtomDoubleComparator AtomDoubleParent AtomDoubleResult AtomDynamicResult AtomExpr AtomHCount AtomIntInt AtomIntResult AtomIterator AtomMass AtomNode AtomProperties AtomsCounter AtomSpec AtomValence AtomVanDerWaalsVolume AtomZPos AtomZPosComparator Autocorrelation BasicFactoryInfo BasicGroups BatchScriptReplacer BFS BFSResult BinaryValue BinAtomExpr BinBondExpr BitArrayResult BitResult BitSet14 BondComparator BondDoubleResult BondDynamicResult BondExpr BondInt BondIntResult BondIterator BondNode BondProperties BondSpec CDKTools CentralDisplayAdapter CentralLookup ChemicalMarkupLanguage ClearTextFormat ClosureBond CMLMoleculeWriter Combine Comparison ComparisonHelper ConformerIterator Convert ConvertSkip CreateFileName Cylinder Deque DequeIterator DequeNode DescBinning DescDescription DescResult Description Descriptor DescriptorException DescriptorFactory DescriptorFilter DescriptorHelper DescriptorInfo DescriptorSelection DescriptorStatistic DescSelectionWriter DescStatistic DescVarianceNorm DFS DFSResult DistanceCalculation DistanceMatrix DoubleArrayResult DoubleInt DoubleMatrixResult DoubleResult DoubleType DragBehavior DynamicArrayResult ElectronAffinity ElectronegativityPauling Element EuklidianComparison External ExternalException ExternalFactory ExternalHelper ExternalInfo FileUtilities Filter FilterException FilterFactory FilterInfo Flat FractionRotatableBonds GasteigerMarsili GasteigerState GCPredictor GenericDataHolder GenericDataIterator GeomDistanceMatrix GeometricalDiameter GeometricalRadius GeometricalShapeCoefficient Geometry GeoVector3D GraphPotentials GraphShapeCoefficient GroupContributions GroupContributionTest HasAllDataFilter HasDataFilter HBA1 HBA2 HBD1 HBD2 HeavyBonds HeteroCycles HydrophobicGroups IcoSphere IndexedCylinder InsertSort IntArrayResult IntBitArrayResult IntInt IntIntInt IntMatrixResult IntResult IOType IOTypeHolder IteratorException JCAMP JCAMPData JCAMPDataBlock JCAMPException JCAMPParser JHM JOE JOEAromaticTyper JOEAtom JOEAtomTyper JOEBitVec JOEBond JOEChemTransformation JOECommentData JOECoordTrans JOEDataType JOEElement JOEElementTable JOEExternalBond JOEExternalBondData JOEFileFormat JOEGastChrg JOEGenericData JOEGlobalDataBase JOEGroupContribution JOEHelper JOEInternalCoord JOEMol JOEMol2Smi JOEMolVector JOEPairData JOEPhModel JOEProcess JOEProcessException JOEProperty JOEPropertyException JOEPropertyHelper JOERandom JOEResidue JOEResidueData JOERgroupData JOERing JOERingData JOERingSearch JOERTree JOESmartsPattern JOESmilesParser JOESmiNode JOESqrtTbl JOESSMatch JOETypeTable JOEVirtualBond JPanel3D KierShape1 KierShape2 KierShape3 LabelData LeafAtomExpr LeafBondExpr Line LineArrayHelper LineMatrixHelper MathHelper MathUtils Matlab Matrix3D Matrix3x3 MatrixHelper MDLSD MDMatrixCache MolconnZ MolDescCounter MolecularScene MolecularWeight MoleculeArray MoleculeFileCDO MoleculeFileCreation MoleculeFileDeletion MoleculeFileType MoleculeHuge MoleculeIOException MoleculeLarge MoleculeNode MoleculesDescriptorMatrix MolViewerEvent MolViewerEventAdapter MolViewerEventListener MonAtomExpr MonBondExpr Morgan MorganTest MouseFastRotate NativeValue NativeValueFilter NativeValueIterator NbrAtomIterator NO2Groups NOTFilter NumberOfAtoms NumberOfB NumberOfBonds NumberOfBr NumberOfC NumberOfCl NumberOfF NumberOfHal NumberOfI NumberOfN NumberOfO NumberOfP NumberOfS ORFilter OSOGroups ParseSmart ParseState Pattern Patty PDB Point3D POVRay PrintfFormat PrintfFormatTest PrintfStream PrintfWriter ProcessFactory ProcessInfo ProcessPipe ProcessPipeEntry PropertyAcceptor PropertyHolder PropertyWriter QuickInsertSort RecurAtomExpr RenderStyle RenderTable ResidueIterator ResourceLoader ResultFactory RingIterator RingSizeComparator RotamerIterator RotatableBonds RotorComparator RotorIterator RSCacheEntry RuleOf5Filter ScanfFormat ScanfFormatTest ScanfMatchException ScanfReader ScanfReaderTest SelectionFilter SharedAtomGroup SharedBondGroup SimpleDoubleDesc SimpleExternalProcess SimpleIntDesc SimpleProcess SimpleReader SimpleWriter SMARTSCounter SMARTSFilter SMARTSPatternFVec SMARTSPatternInt SMARTSPatternIntInt SMARTSPatternString Smiles SO2Groups SOGroups SortedVector Sorter Sphere SSKey3DS StackType Statistics StatisticUtils StopWatch StringInt StringPattern StringString SybylMol2 Template TestDescriptor TestLayout TestMolecule TestPatty TestSmarts TestSMILES TestSSSR Tinker Title2Data Title2DataTest ToolTipInfo TopologicalDiameter TopologicalRadius Undefined VectorIterator Viewer ViewerAtom ViewerAtoms ViewerBond ViewerBonds ViewerFrame ViewerMolecule ViewerUsage VVIntComparator XYDoubleArray XYIntArray XYZ XYZVector ZagrebIndex1 ZagrebIndex2